Detailed information of SNP:
|
SNP ID:
sf0812611848(Gbrowse)
Chromosome: chr08 Position: 12611848 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 66.37% | 33.63% |
| All Indica | 750 | 83.60% | 16.40% |
| All Japonica | 488 | 34.63% | 65.37% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 358 | 81.56% | 18.44% |
| Indica II | 203 | 89.16% | 10.84% |
| Indica Intermediate | 189 | 81.48% | 18.52% |
| Temperate Japonica | 333 | 18.02% | 81.98% |
| Tropical Japonica | 90 | 78.89% | 21.11% |
| Japonica Intermediate | 65 | 58.46% | 41.54% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812611848 | A->G | LOC_Os08g21110(LOC_Os08g21110.1) | Non-Synonymous SNP |