Detailed information of SNP:
|
SNP ID:
sf0812619518(Gbrowse)
Chromosome: chr08 Position: 12619518 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 54.99% | 45.01% |
| All Indica | 797 | 88.71% | 11.29% |
| All Japonica | 491 | 5.50% | 94.50% |
| Aus | 60 | 25.00% | 75.00% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 89 | 20.22% | 79.78% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812619518 | G->C | LOC_Os08g21110(LOC_Os08g21110.1) | Non-Synonymous SNP |