Detailed information of SNP:
|
SNP ID:
sf0812627780(Gbrowse)
Chromosome: chr08 Position: 12627780 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 95.96% | 4.04% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 89.21% | 10.79% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 94.86% | 5.14% |
| Tropical Japonica | 93 | 73.12% | 26.88% |
| Japonica Intermediate | 67 | 83.58% | 16.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812627780 | T->C | LOC_Os08g21124(LOC_Os08g21124.1) | Synonymous |