Detailed information of SNP:
|
SNP ID:
sf0812657068(Gbrowse)
Chromosome: chr08 Position: 12657068 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 52.62% | 47.38% |
| All Indica | 770 | 34.03% | 65.97% |
| All Japonica | 495 | 80.61% | 19.39% |
| Aus | 57 | 75.44% | 24.56% |
| Indica I | 362 | 30.66% | 69.34% |
| Indica II | 201 | 39.30% | 60.70% |
| Indica Intermediate | 207 | 34.78% | 65.22% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812657068 | T->C | LOC_Os08g21200(LOC_Os08g21200.1) | Non-Synonymous SNP |