Detailed information of SNP:
|
SNP ID:
sf0812657448(Gbrowse)
Chromosome: chr08 Position: 12657448 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 57.84% | 42.16% |
| All Indica | 768 | 44.27% | 55.73% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 59 | 74.58% | 25.42% |
| Indica I | 357 | 40.90% | 59.10% |
| Indica II | 208 | 48.08% | 51.92% |
| Indica Intermediate | 203 | 46.31% | 53.69% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812657448 | A->G | LOC_Os08g21200(LOC_Os08g21200.1) | INTRON |