Detailed information of SNP:
|
SNP ID:
sf0812658137(Gbrowse)
Chromosome: chr08 Position: 12658137 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1302 | 63.67% | 36.33% |
| All Indica | 730 | 80.55% | 19.45% |
| All Japonica | 457 | 30.20% | 69.80% |
| Aus | 61 | 100.00% | 0.00% |
| Indica I | 341 | 79.47% | 20.53% |
| Indica II | 199 | 82.91% | 17.09% |
| Indica Intermediate | 190 | 80.00% | 20.00% |
| Temperate Japonica | 299 | 7.02% | 92.98% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812658137 | A->G | LOC_Os08g21200(LOC_Os08g21200.1) | Non-Synonymous SNP |