Detailed information of SNP:



SNP ID: sf0812693253(Gbrowse)

Chromosome: chr08

Position: 12693253
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1405 79.00% 21.00%
All Indica785 89.43% 10.57%
All Japonica497 69.62% 30.38%
Aus67 50.75% 49.25%
Indica I368 93.21% 6.79%
Indica II211 85.31% 14.69%
Indica Intermediate206 86.89% 13.11%
Temperate Japonica335 85.97% 14.03%
Tropical Japonica94 22.34% 77.66%
Japonica Intermediate68 54.41% 45.59%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0812693253 C->T LOC_Os08g21260(LOC_Os08g21260.1) Synonymous