Detailed information of SNP:
|
SNP ID:
sf0812693253(Gbrowse)
Chromosome: chr08 Position: 12693253 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 79.00% | 21.00% |
| All Indica | 785 | 89.43% | 10.57% |
| All Japonica | 497 | 69.62% | 30.38% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 368 | 93.21% | 6.79% |
| Indica II | 211 | 85.31% | 14.69% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812693253 | C->T | LOC_Os08g21260(LOC_Os08g21260.1) | Synonymous |