Detailed information of SNP:
|
SNP ID:
sf0812786764(Gbrowse)
Chromosome: chr08 Position: 12786764 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 96.96% | 3.04% |
| All Indica | 774 | 95.87% | 4.13% |
| All Japonica | 487 | 99.38% | 0.62% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 363 | 95.59% | 4.41% |
| Indica II | 206 | 96.60% | 3.40% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812786764 | T->A | INTERGENIC | None |