Detailed information of SNP:
|
SNP ID:
sf0812789134(Gbrowse)
Chromosome: chr08 Position: 12789134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 80.93% | 19.07% |
| All Indica | 712 | 64.75% | 35.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 328 | 46.65% | 53.35% |
| Indica II | 190 | 83.16% | 16.84% |
| Indica Intermediate | 194 | 77.32% | 22.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812789134 | T->C | LOC_Os08g21460(LOC_Os08g21460.1) | INTRON |