Detailed information of SNP:
|
SNP ID:
sf0812791492(Gbrowse)
Chromosome: chr08 Position: 12791492 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 60.21% | 39.79% |
| All Indica | 786 | 90.20% | 9.80% |
| All Japonica | 497 | 12.07% | 87.93% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 368 | 90.22% | 9.78% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 208 | 89.42% | 10.58% |
| Temperate Japonica | 335 | 13.43% | 86.57% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812791492 | C->T | LOC_Os08g21460(LOC_Os08g21460.1) | Synonymous |