Detailed information of SNP:
|
SNP ID:
sf0812792331(Gbrowse)
Chromosome: chr08 Position: 12792331 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 50.36% | 49.64% |
| All Indica | 760 | 79.74% | 20.26% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 348 | 78.74% | 21.26% |
| Indica II | 207 | 85.99% | 14.01% |
| Indica Intermediate | 205 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 37.50% | 62.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812792331 | A->C | INTERGENIC | None |