Detailed information of SNP:
|
SNP ID:
sf0812794133(Gbrowse)
Chromosome: chr08 Position: 12794133 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.91% | 10.09% |
| All Indica | 791 | 85.34% | 14.66% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 372 | 85.22% | 14.78% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 206 | 75.24% | 24.76% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812794133 | C->T | LOC_Os08g21470(LOC_Os08g21470.1) | Synonymous |