Detailed information of SNP:
|
SNP ID:
sf0812796500(Gbrowse)
Chromosome: chr08 Position: 12796500 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 52.95% | 47.05% |
| All Indica | 775 | 23.87% | 76.13% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 363 | 24.52% | 75.48% |
| Indica II | 205 | 22.93% | 77.07% |
| Indica Intermediate | 207 | 23.67% | 76.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812796500 | A->G | INTERGENIC | None |