Detailed information of SNP:
|
SNP ID:
sf0812796653(Gbrowse)
Chromosome: chr08 Position: 12796653 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 53.88% | 46.12% |
| All Indica | 784 | 72.83% | 27.17% |
| All Japonica | 497 | 20.93% | 79.07% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 371 | 71.43% | 28.57% |
| Indica II | 209 | 74.16% | 25.84% |
| Indica Intermediate | 204 | 74.02% | 25.98% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812796653 | A->G | INTERGENIC | None |