Detailed information of SNP:
|
SNP ID:
sf0812824450(Gbrowse)
Chromosome: chr08 Position: 12824450 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 91.22% | 8.78% |
| All Indica | 791 | 98.23% | 1.77% |
| All Japonica | 488 | 82.17% | 17.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 205 | 97.56% | 2.44% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 36.26% | 63.74% |
| Japonica Intermediate | 63 | 61.90% | 38.10% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812824450 | A->G | INTERGENIC | None |