Detailed information of SNP:
|
SNP ID:
sf0812968483(Gbrowse)
Chromosome: chr08 Position: 12968483 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1256 | 92.44% | 7.56% |
| All Indica | 665 | 98.20% | 1.80% |
| All Japonica | 474 | 82.91% | 17.09% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 308 | 97.40% | 2.60% |
| Indica II | 180 | 99.44% | 0.56% |
| Indica Intermediate | 177 | 98.31% | 1.69% |
| Temperate Japonica | 314 | 76.11% | 23.89% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0812968483 | A->C | INTERGENIC | None |