Detailed information of SNP:
|
SNP ID:
sf0813085658(Gbrowse)
Chromosome: chr08 Position: 13085658 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 51.45% | 48.55% |
| All Indica | 763 | 33.03% | 66.97% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 358 | 37.99% | 62.01% |
| Indica II | 204 | 26.47% | 73.53% |
| Indica Intermediate | 201 | 30.85% | 69.15% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813085658 | G->C | LOC_Os08g21860(LOC_Os08g21860.1) | INTRON |