Detailed information of SNP:
|
SNP ID:
sf0813086954(Gbrowse)
Chromosome: chr08 Position: 13086954 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 53.47% | 46.53% |
| All Indica | 756 | 63.76% | 36.24% |
| All Japonica | 479 | 29.44% | 70.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 64.97% | 35.03% |
| Indica II | 202 | 61.88% | 38.12% |
| Indica Intermediate | 200 | 63.50% | 36.50% |
| Temperate Japonica | 333 | 15.62% | 84.38% |
| Tropical Japonica | 81 | 70.37% | 29.63% |
| Japonica Intermediate | 65 | 49.23% | 50.77% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813086954 | T->C | LOC_Os08g21860(LOC_Os08g21860.1) | INTRON |