Detailed information of SNP:
|
SNP ID:
sf0813107329(Gbrowse)
Chromosome: chr08 Position: 13107329 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 53.66% | 46.34% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 491 | 4.07% | 95.93% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 89 | 13.48% | 86.52% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813107329 | G->A | INTERGENIC | None |