Detailed information of SNP:
|
SNP ID:
sf0813113922(Gbrowse)
Chromosome: chr08 Position: 13113922 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 58.87% | 41.13% |
| All Indica | 796 | 93.34% | 6.66% |
| All Japonica | 482 | 5.39% | 94.61% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 83 | 14.46% | 85.54% |
| Japonica Intermediate | 65 | 6.15% | 93.85% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813113922 | C->A | INTERGENIC | None |