Detailed information of SNP:
|
SNP ID:
sf0813115033(Gbrowse)
Chromosome: chr08 Position: 13115033 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 72.44% | 27.56% |
| All Indica | 793 | 98.87% | 1.13% |
| All Japonica | 492 | 26.83% | 73.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 334 | 16.47% | 83.53% |
| Tropical Japonica | 90 | 61.11% | 38.89% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 11 | 54.55% | 45.45% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813115033 | T->C | INTERGENIC | None |