Detailed information of SNP:
|
SNP ID:
sf0813132985(Gbrowse)
Chromosome: chr08 Position: 13132985 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 71.39% | 28.61% |
| All Indica | 798 | 99.00% | 1.00% |
| All Japonica | 493 | 23.73% | 76.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 16.72% | 83.28% |
| Tropical Japonica | 91 | 46.15% | 53.85% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813132985 | A->G | LOC_Os08g21920(LOC_Os08g21920.1) | INTRON |