Detailed information of SNP:
|
SNP ID:
sf0813205141(Gbrowse)
Chromosome: chr08 Position: 13205141 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 58.70% | 41.30% |
| All Indica | 706 | 27.62% | 72.38% |
| All Japonica | 486 | 97.53% | 2.47% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 325 | 27.38% | 72.62% |
| Indica II | 194 | 26.80% | 73.20% |
| Indica Intermediate | 187 | 28.88% | 71.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 86 | 93.02% | 6.98% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813205141 | C->T | LOC_Os08g22006(LOC_Os08g22006.1) | Synonymous |