Detailed information of SNP:
|
SNP ID:
sf0813241872(Gbrowse)
Chromosome: chr08 Position: 13241872 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1131 | 61.89% | 38.11% |
| All Indica | 550 | 42.00% | 58.00% |
| All Japonica | 482 | 84.23% | 15.77% |
| Aus | 52 | 53.85% | 46.15% |
| Indica I | 248 | 37.50% | 62.50% |
| Indica II | 156 | 46.79% | 53.21% |
| Indica Intermediate | 146 | 44.52% | 55.48% |
| Temperate Japonica | 331 | 84.29% | 15.71% |
| Tropical Japonica | 87 | 82.76% | 17.24% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 33 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813241872 | A->G | INTERGENIC | None |