Detailed information of SNP:
|
SNP ID:
sf0813256623(Gbrowse)
Chromosome: chr08 Position: 13256623 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 93.01% | 6.99% |
| All Indica | 733 | 90.31% | 9.69% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 89.61% | 10.39% |
| Indica II | 183 | 92.35% | 7.65% |
| Indica Intermediate | 194 | 89.69% | 10.31% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 11 | 45.45% | 54.55% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813256623 | T->C | LOC_Os08g22026(LOC_Os08g22026.1) | Synonymous |