Detailed information of SNP:
|
SNP ID:
sf0813333816(Gbrowse)
Chromosome: chr08 Position: 13333816 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 89.50% | 10.50% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 491 | 89.61% | 10.39% |
| Aus | 48 | 20.83% | 79.17% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 333 | 87.99% | 12.01% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813333816 | T->C | LOC_Os08g22080(LOC_Os08g22080.1) | Non-Synonymous SNP |