Detailed information of SNP:
|
SNP ID:
sf0813350330(Gbrowse)
Chromosome: chr08 Position: 13350330 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 75.28% | 24.72% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 485 | 32.16% | 67.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 17.72% | 82.28% |
| Tropical Japonica | 86 | 70.93% | 29.07% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813350330 | A->G | INTERGENIC | None |