Detailed information of SNP:
|
SNP ID:
sf0813410253(Gbrowse)
Chromosome: chr08 Position: 13410253 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 60.33% | 39.67% |
| All Indica | 732 | 75.55% | 24.45% |
| All Japonica | 490 | 33.67% | 66.33% |
| Aus | 51 | 84.31% | 15.69% |
| Indica I | 343 | 71.14% | 28.86% |
| Indica II | 194 | 84.02% | 15.98% |
| Indica Intermediate | 195 | 74.87% | 25.13% |
| Temperate Japonica | 332 | 15.36% | 84.64% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 35 | 65.71% | 34.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813410253 | T->C | INTERGENIC | None |