Detailed information of SNP:



SNP ID: sf0813416448(Gbrowse)

Chromosome: chr08

Position: 13416448
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1334 72.04% 27.96%
All Indica719 49.79% 50.21%
All Japonica496 99.19% 0.81%
Aus64 96.88% 3.12%
Indica I339 39.23% 60.77%
Indica II191 58.12% 41.88%
Indica Intermediate189 60.32% 39.68%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 85.37% 14.63%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0813416448 G->A LOC_Os08g22260(LOC_Os08g22260.1) INTRON