Detailed information of SNP:
|
SNP ID:
sf0813416448(Gbrowse)
Chromosome: chr08 Position: 13416448 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 72.04% | 27.96% |
| All Indica | 719 | 49.79% | 50.21% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 339 | 39.23% | 60.77% |
| Indica II | 191 | 58.12% | 41.88% |
| Indica Intermediate | 189 | 60.32% | 39.68% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813416448 | G->A | LOC_Os08g22260(LOC_Os08g22260.1) | INTRON |