Detailed information of SNP:
|
SNP ID:
sf0813417396(Gbrowse)
Chromosome: chr08 Position: 13417396 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1342 | 63.19% | 36.81% |
| All Indica | 752 | 86.44% | 13.56% |
| All Japonica | 488 | 22.95% | 77.05% |
| Aus | 49 | 89.80% | 10.20% |
| Indica I | 356 | 89.04% | 10.96% |
| Indica II | 197 | 86.80% | 13.20% |
| Indica Intermediate | 199 | 81.41% | 18.59% |
| Temperate Japonica | 330 | 3.03% | 96.97% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 66 | 51.52% | 48.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813417396 | C->T | LOC_Os08g22260(LOC_Os08g22260.1) | Synonymous |