Detailed information of SNP:
|
SNP ID:
sf0813430656(Gbrowse)
Chromosome: chr08 Position: 13430656 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 79.80% | 20.20% |
| All Indica | 778 | 70.82% | 29.18% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 366 | 75.14% | 24.86% |
| Indica II | 206 | 66.50% | 33.50% |
| Indica Intermediate | 206 | 67.48% | 32.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813430656 | A->C | LOC_Os08g22284(LOC_Os08g22284.1) | INTRON |