Detailed information of SNP:
|
SNP ID:
sf0813431080(Gbrowse)
Chromosome: chr08 Position: 13431080 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 83.80% | 16.20% |
| All Indica | 772 | 71.76% | 28.24% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 360 | 76.11% | 23.89% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 204 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813431080 | A->G | LOC_Os08g22284(LOC_Os08g22284.1) | Synonymous |