Detailed information of SNP:
|
SNP ID:
sf0813444380(Gbrowse)
Chromosome: chr08 Position: 13444380 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 96.75% | 3.25% |
| All Indica | 797 | 96.11% | 3.89% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813444380 | G->A | LOC_Os08g22310(LOC_Os08g22310.1) | Non-Synonymous SNP |