Detailed information of SNP:
|
SNP ID:
sf0813444857(Gbrowse)
Chromosome: chr08 Position: 13444857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 91.87% | 8.13% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 492 | 81.71% | 18.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813444857 | G->A | LOC_Os08g22310(LOC_Os08g22310.1) | Non-Synonymous SNP |