Detailed information of SNP:
|
SNP ID:
sf0813520293(Gbrowse)
Chromosome: chr08 Position: 13520293 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 93.05% | 6.95% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 488 | 83.40% | 16.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 88 | 42.05% | 57.95% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813520293 | C->T | LOC_Os08g22410(LOC_Os08g22410.1) | Synonymous |