Detailed information of SNP:
|
SNP ID:
sf0813551809(Gbrowse)
Chromosome: chr08 Position: 13551809 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 75.21% | 24.79% |
| All Indica | 793 | 88.65% | 11.35% |
| All Japonica | 497 | 66.60% | 33.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 93.32% | 6.68% |
| Indica II | 210 | 81.90% | 18.10% |
| Indica Intermediate | 209 | 87.08% | 12.92% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813551809 | A->G | INTERGENIC | None |