Detailed information of SNP:
|
SNP ID:
sf0813554410(Gbrowse)
Chromosome: chr08 Position: 13554410 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 92.59% | 7.41% |
| All Indica | 783 | 87.36% | 12.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 90.84% | 9.16% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 204 | 85.29% | 14.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813554410 | G->A | LOC_Os08g22500(LOC_Os08g22500.1) | INTRON |
| sf0813554410 | G->A | LOC_Os08g22500(LOC_Os08g22500.1) | SNPs that disrupt splice sites |