Detailed information of SNP:
|
SNP ID:
sf0813554809(Gbrowse)
Chromosome: chr08 Position: 13554809 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 79.55% | 20.45% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 496 | 70.97% | 29.03% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 334 | 89.82% | 10.18% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813554809 | A->G | LOC_Os08g22500(LOC_Os08g22500.1) | Non-Synonymous SNP |