Detailed information of SNP:



SNP ID: sf0813620404(Gbrowse)

Chromosome: chr08

Position: 13620404
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1410 54.54% 45.46%
All Indica791 93.55% 6.45%
All Japonica497 1.61% 98.39%
Aus67 5.97% 94.03%
Indica I373 98.66% 1.34%
Indica II209 82.78% 17.22%
Indica Intermediate209 95.22% 4.78%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 0.00% 100.00%
Intermediate41 41.46% 58.54%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0813620404 C->T INTERGENIC None