Detailed information of SNP:
|
SNP ID:
sf0813626217(Gbrowse)
Chromosome: chr08 Position: 13626217 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 54.43% | 45.57% |
| All Indica | 758 | 94.99% | 5.01% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 366 | 99.18% | 0.82% |
| Indica II | 199 | 84.92% | 15.08% |
| Indica Intermediate | 193 | 97.41% | 2.59% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813626217 | C->T | LOC_Os08g22650(LOC_Os08g22650.1) | SNPs that introduce stop codons |