Detailed information of SNP:
|
SNP ID:
sf0813631561(Gbrowse)
Chromosome: chr08 Position: 13631561 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 77.40% | 22.60% |
| All Indica | 777 | 92.66% | 7.34% |
| All Japonica | 496 | 66.53% | 33.47% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 208 | 83.17% | 16.83% |
| Indica Intermediate | 200 | 92.50% | 7.50% |
| Temperate Japonica | 334 | 84.13% | 15.87% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813631561 | A->G | LOC_Os08g22660(LOC_Os08g22660.1) | Non-Synonymous SNP |