Detailed information of SNP:
|
SNP ID:
sf0813649014(Gbrowse)
Chromosome: chr08 Position: 13649014 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 93.36% | 6.64% |
| All Indica | 781 | 88.73% | 11.27% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 90.46% | 9.54% |
| Indica II | 210 | 86.67% | 13.33% |
| Indica Intermediate | 204 | 87.75% | 12.25% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649014 | C->T | INTERGENIC | None |