Detailed information of SNP:
|
SNP ID:
sf0813649494(Gbrowse)
Chromosome: chr08 Position: 13649494 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 75.41% | 24.59% |
| All Indica | 787 | 60.36% | 39.64% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 38.42% | 61.58% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 209 | 72.73% | 27.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649494 | A->G | INTERGENIC | None |