Detailed information of SNP:
|
SNP ID:
sf0813649533(Gbrowse)
Chromosome: chr08 Position: 13649533 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 76.14% | 23.86% |
| All Indica | 788 | 61.55% | 38.45% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 39.57% | 60.43% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649533 | A->G | INTERGENIC | None |