Detailed information of SNP:
|
SNP ID:
sf0813649614(Gbrowse)
Chromosome: chr08 Position: 13649614 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1370 | 79.27% | 20.73% |
| All Indica | 754 | 66.45% | 33.55% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 44.09% | 55.91% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 198 | 81.31% | 18.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649614 | C->T | INTERGENIC | None |