Detailed information of SNP:
|
SNP ID:
sf0813649767(Gbrowse)
Chromosome: chr08 Position: 13649767 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 71.63% | 28.37% |
| All Indica | 793 | 54.60% | 45.40% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 35.48% | 64.52% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649767 | C->T | INTERGENIC | None |