Detailed information of SNP:
|
SNP ID:
sf0813649779(Gbrowse)
Chromosome: chr08 Position: 13649779 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 79.31% | 20.69% |
| All Indica | 771 | 66.67% | 33.33% |
| All Japonica | 495 | 95.96% | 4.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 46.65% | 53.35% |
| Indica II | 212 | 88.21% | 11.79% |
| Indica Intermediate | 201 | 79.60% | 20.40% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 82.61% | 17.39% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813649779 | G->A | INTERGENIC | None |