Detailed information of SNP:
|
SNP ID:
sf0813652014(Gbrowse)
Chromosome: chr08 Position: 13652014 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 84.08% | 15.92% |
| All Indica | 798 | 87.47% | 12.53% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 38 | 18.42% | 81.58% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813652014 | A->G | INTERGENIC | None |