Detailed information of SNP:
|
SNP ID:
sf0813657332(Gbrowse)
Chromosome: chr08 Position: 13657332 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1351 | 51.59% | 48.41% |
| All Indica | 747 | 17.14% | 82.86% |
| All Japonica | 484 | 96.69% | 3.31% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 351 | 14.53% | 85.47% |
| Indica II | 196 | 20.41% | 79.59% |
| Indica Intermediate | 200 | 18.50% | 81.50% |
| Temperate Japonica | 330 | 97.27% | 2.73% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813657332 | T->C | INTERGENIC | None |