Detailed information of SNP:
|
SNP ID:
sf0813666399(Gbrowse)
Chromosome: chr08 Position: 13666399 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 86.66% | 13.34% |
| All Indica | 735 | 79.05% | 20.95% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 64.52% | 35.48% |
| Indica I | 343 | 74.05% | 25.95% |
| Indica II | 200 | 87.50% | 12.50% |
| Indica Intermediate | 192 | 79.17% | 20.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0813666399 | T->A | LOC_Os08g22740(LOC_Os08g22740.1) | INTRON |